Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| UCEC | rs1051846 | chr5:54404057 | C/G | 4.9E-5 | 174 | 21.03 | 25.8 | 18.47 | KM Plot |
| UCEC | rs1055888 | chr2:74086659 | T/A | 3.07E-5 | 168 | 22.67 | 21.6 | 18.47 | KM Plot |
| UCEC | rs10580525 | chr12:32821706 | CAT/C | 0.000118 | 171 | 21.08 | 23.57 | 24.87 | KM Plot |
| UCEC | rs10639904 | chr16:30840120 | G/GAAAAA | 9.02E-9 | 171 | 4.5 | 18.03 | 22.75 | KM Plot |
| UCEC | rs10658843 | chr15:58191530 | C/CCTG | 4.51E-9 | 168 | 22.93 | 20.25 | 9.62 | KM Plot |
| UCEC | rs10807004 | chr6:25927057 | G/T | 4.17E-5 | 167 | 22.2 | 25.47 | 13.93 | KM Plot |
| UCEC | rs10831760 | chr11:12221996 | C/G | 1.33E-5 | 170 | 24.07 | 20.33 | 15.35 | KM Plot |
| UCEC | rs10864455 | chr1:10503000 | A/G | 5.66E-5 | 171 | 20.33 | 20.93 | 22.7 | KM Plot |
| UCEC | rs10864456 | chr1:10503641 | G/A | 5.66E-5 | 171 | 20.33 | 20.93 | 22.7 | KM Plot |
| UCEC | rs10875887 | chr12:49303581 | C/T | 9.99E-6 | 169 | 11.37 | 22.97 | 22.7 | KM Plot |
| UCEC | rs10878322 | chr12:66119818 | A/G | 3.87E-7 | 174 | 22.08 | 22.8 | 10.33 | KM Plot |
| UCEC | rs10942855 | chr5:77737529 | G/A | 5.51E-5 | 170 | 18.37 | 25.87 | 21.55 | KM Plot |
| UCEC | rs10949933 | chr7:64172516 | T/C | 0 | 172 | 22.6 | 22.9 | 2.4 | KM Plot |
| UCEC | rs10976835 | chr9:827881 | G/A | 1.11E-8 | 168 | 22.7 | 20.07 | 4.5 | KM Plot |
| UCEC | rs10976836 | chr9:828086 | C/G | 1.11E-8 | 168 | 22.7 | 20.07 | 4.5 | KM Plot |